PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038160-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 127aa    MW: 14121.2 Da    PI: 8.2812
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038160-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26042.12.5e-13261155
            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55
                      +C++C vlr++C+++C+l+p++     +++q++++++++k++G  ++++l+++ pe+ r+
  PSME_00038160-RA  2 SCNGCLVLRKGCSESCILRPCLnwintAESQANATRYLAKFYGHVELTNLIRNDPEHSRP 61
                      6*********************9999778999*********************9999994 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.1E-9263IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MSCNGCLVLR KGCSESCILR PCLNWINTAE SQANATRYLA KFYGHVELTN LIRNDPEHSR  60
PVCEAGVESI LLGTFPAYTW ADFSCDIVGT ARQELQRSVK PIGRLKQLPM GFLQNPNTSS  120
SIAYIPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6RB685e-27A0A0D6RB68_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.19e-26LOB domain-containing protein 40