PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038236-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 177aa    MW: 20206.1 Da    PI: 10.1059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038236-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.0001770110532
                       HHHHHHHHHHHHHHHHHHHHCTSCCC............... CS
               HLH   5 hnerErrRRdriNsafeeLrellPkas.............k 32 
                       +++ E++R ++++  f++Lr+ll +               +
  PSME_00038236-RA  70 KKITEKKRPKDMKMLFSRLRSLLLEEIfqsrgidictlleN 110
                       6899*******************986445555555555550 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAIRMTKDEE YGAEDSEAGR WRENIVPRQS LMGSACIGEV VMDTQFLDNA CVAHREQRKT  60
NPVDLHQSVK KITEKKRPKD MKMLFSRLRS LLLEEIFQSR GIDICTLLEN GRNIGWSKRR  120
STFLDESEFG RAGDQIEIGR KRSKRNKSSM KPPVRENPGL EEVSKPGAQR ATKGVLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-