PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038304-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 193aa    MW: 21373.9 Da    PI: 8.4767
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038304-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.77.2e-42381371100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq ++l++e
  PSME_00038304-RA  38 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLLEVPESQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQAQSLQSE 130
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++++e
  PSME_00038304-RA 131 LNSVRAE 137
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.41637138IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4138135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
ENFENLSRRA SFQQLADADR MGRRQILGPP GALNTITPCA ACKLLRRRCA QECPFSPYFS  60
PHEPQKFASV HKVFGASNVS KMLLEVPESQ RADAANSLVY EANVRLRDPV YGCMGAISSL  120
QQQAQSLQSE LNSVRAEIMR YKFRSDAAVM HHQPPGQSSH QASMMPSSST VYSQGSASTD  180
YTAINDHHSN YYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-453814111114LOB family transfactor Ramosa2.1
5ly0_B4e-453814111114LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1022330.0BT102233.1 Picea glauca clone GQ0171_H05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018821727.15e-86PREDICTED: LOB domain-containing protein 15-like
SwissprotQ9AT618e-72LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3S3NG723e-85A0A3S3NG72_9MAGN; LOB domain-containing protein 15
STRINGGorai.009G295000.14e-84(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.17e-69LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]