PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038322-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 821aa    MW: 90808.6 Da    PI: 6.5087
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038322-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11389445155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  PSME_00038322-RA 389 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 445
                       78*******************433.44555535555.779999**************98 PP
2AP2476.5e-15488539155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PSME_00038322-RA 488 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 539
                       78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-14389455IPR016177DNA-binding domain
CDDcd000185.32E-19389453No hitNo description
PfamPF008471.9E-8389445IPR001471AP2/ERF domain
PROSITE profilePS5103217.319390453IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-12390454IPR001471AP2/ERF domain
SMARTSM003809.4E-22390459IPR001471AP2/ERF domain
PRINTSPR003677.6E-6391402IPR001471AP2/ERF domain
CDDcd000182.69E-24488549No hitNo description
SuperFamilySSF541712.48E-17488549IPR016177DNA-binding domain
PfamPF008479.3E-10488539IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-18489547IPR001471AP2/ERF domain
SMARTSM003803.6E-33489553IPR001471AP2/ERF domain
PROSITE profilePS5103218.913489547IPR001471AP2/ERF domain
PRINTSPR003677.6E-6529549IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MKHMNNWLAF SLSPHLAIDV GNTAQAQAQA QAQAQASSNT TCYAVNNNNQ VPQSTMGYQS  60
SAECYGINAA NGHYSSQMSE LPLRSDGSLC IMEALGRSQT TNWHLKHLDA SRSLQSDSSG  120
LQSSQQLLNR ELPRFSRNNG TDHHMTRGSQ YDNNMPSQNG SEREGPKLED FLGGASLGNQ  180
YSTNHETHSQ AMDGMYYAGV GFHREHNNEK INVNLPFMQC RQREVPSPWV DSHSYEAQPR  240
SLQMQQENHD LCEFVQESQQ MPFHVQLDPN SNDTMFSDCS LQLPPGSGLV GLSALKTWLR  300
QNPSNADHHK VPSGSGSPGK SNLGGGLGDF QSLTLSMSPG SQNSSAIISQ PAIIDHCTPV  360
ETKKRGAGKS GSREPVPRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK  420
GRQGGYDKEE KAARAYDLAA LKYWGASTHI NFPLETYEKE LEEMKNMTRQ EYVANLRRKS  480
SGFSRGASVY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGI  540
SAVTNFDISK YDVQRICSSS TLIAGDLAKR NKEIEQSSEP SGDSPLQVEA APLQIEAAHN  600
SQSQSHNDNA KDGNNSTSCN DSNHNNNVVG SLSDKIAQDW QLMDSNSDQD QHKVFNNWVV  660
EHEDRKPDQS FIESLQLGPH SHNAVLHDLI GLDSSTAADS DQSNNEETSR LLTDISGGNN  720
SLLTMSNASN TGPVESPVNS ASENEEGHHR KIAVYDNMLP AGEFPQALFF SSPQQASKLV  780
KYENVNTTLS PWMIPPNTVQ QLQSRPNLSV GHLPMFALWN E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1015850.0AB101585.1 Pinus thunbergii PtANTL1 mRNA for AINTEGUMENTA-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625364.21e-174AP2-like ethylene-responsive transcription factor ANT
TrEMBLQ76H960.0Q76H96_PINTH; AINTEGUMENTA-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-119AP2 family protein