PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038331-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 105aa    MW: 11542.5 Da    PI: 9.3937
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038331-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.92e-397104198
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk++++kC+++Cvlapy+p+++p+kf  vh +FG+ +v+kll++lp e+r +a+ss+vyeA  r rdPv+G+vgvi++lq+++++l+++
  PSME_00038331-RA   7 PCAACKIQKKKCSEKCVLAPYLPQSNPQKFLLVHTVFGNGHVIKLLQDLPAEQRAQAVSSMVYEASQRFRDPVHGCVGVISDLQKKVAELQSQ 99 
                       7******************************************************************************************** PP

            DUF260  94 lallk 98 
                       la ++
  PSME_00038331-RA 100 LAFTQ 104
                       *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.826105IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-397104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSKVTSPCAA CKIQKKKCSE KCVLAPYLPQ SNPQKFLLVH TVFGNGHVIK LLQDLPAEQR  60
AQAVSSMVYE ASQRFRDPVH GCVGVISDLQ KKVAELQSQL AFTQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-33610010104LOB family transfactor Ramosa2.1
5ly0_B1e-33610010104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307415.13e-43PREDICTED: LOB domain-containing protein 1-like
RefseqXP_022157927.13e-43LOB domain-containing protein 11-like
SwissprotQ9SK082e-41LBD11_ARATH; LOB domain-containing protein 11
TrEMBLB8LQI97e-57B8LQI9_PICSI; Uncharacterized protein
STRINGXP_004307415.11e-42(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.19e-44LOB domain-containing protein 11