PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038518-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 204aa    MW: 21747.4 Da    PI: 11.5343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038518-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.43.8e-06177202530
                       HHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                       h+++E+ RR+ri +++  L+el+P++
  PSME_00038518-RA 177 HSIAEQLRRERIAERMKALQELVPNS 202
                       99**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-6170203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.575172204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-4176204No hitNo description
Gene3DG3DSA:4.10.280.107.6E-6177203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQLRQHPLSG NSSMNQMPNQ VSQGINETNT SPGRSMLSTG NATASQLLAS MGNSPRGTAV  60
MTQSPSTGGS CNGSDRGMLP LPLSLSQAGK SGEMNETRLW DEIEASFKSA NNARDSNLRG  120
LFPPFARSPR GSGQVPMQGY GGMPQPQHQN PPPTGVGAAP PVRPRVRAPR GQAIDPHSIA  180
EQLRRERIAE RMKALQELVP NSNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150431e-108BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857186.22e-25transcription factor bHLH66
RefseqXP_011628047.12e-25transcription factor bHLH66
RefseqXP_020530898.12e-25transcription factor bHLH66
RefseqXP_020530899.12e-25transcription factor bHLH66
TrEMBLA0A2P5F3C23e-24A0A2P5F3C2_TREOI; Basic helix-loop-helix transcription factor
TrEMBLU5DE193e-24U5DE19_AMBTC; Uncharacterized protein
STRINGERN186534e-25(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.15e-14LJRHL1-like 1