PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038523-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 221aa    MW: 24778.7 Da    PI: 8.1922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038523-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-173786255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykG+r +k +grWv+eIr p++   r +++lg++ t+e+Aa+a++aa  +l+g
  PSME_00038523-RA 37 QYKGIRLRK-WGRWVSEIRRPKS---REKIWLGSYKTPEQAARAYDAAVYCLRG 86
                      69*****99.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.3E-303696IPR001471AP2/ERF domain
PROSITE profilePS5103221.9313794IPR001471AP2/ERF domain
PfamPF008471.2E-103786IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-203796IPR016177DNA-binding domain
CDDcd000189.43E-283796No hitNo description
SMARTSM003807.4E-3237100IPR001471AP2/ERF domain
PRINTSPR003675.6E-113849IPR001471AP2/ERF domain
PRINTSPR003675.6E-117696IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGSRSVKASA SPNMEKCPQQ EHDQAIALSH QDRGARQYKG IRLRKWGRWV SEIRRPKSRE  60
KIWLGSYKTP EQAARAYDAA VYCLRGPKAK LNFPDSVPNI PTASSLSPKQ IQNAAIKYAL  120
GQTPATQPSP NNNKEETASA SQLSSLSEME LASDKQQILE ERHDSVLWRS VFAASDGPEL  180
PNLEKIPSMD DVSTLEFSRL SLEQPQDGYY ISTDLWNFQD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1437941472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273874.19e-37PREDICTED: ethylene-responsive transcription factor RAP2-9-like
SwissprotQ9C5917e-33ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A2S1PRQ71e-116A0A2S1PRQ7_9SPER; Dehydration-responsive element binding transcription factor
STRINGXP_010273874.13e-36(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-35ERF family protein