PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038524-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 206aa    MW: 23268.7 Da    PI: 4.4215
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038524-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-172473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+  +k +g+Wv+eIr p++   rk+++lg++ t+e+Aa+a++aa  +l+g
  PSME_00038524-RA 24 QFKGIQLRK-WGKWVSEIRIPKS---RKKIWLGSYATPEQAARAYDAAVYCLRG 73
                      68***9999.**********954...4*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-272383IPR001471AP2/ERF domain
SMARTSM003801.4E-292487IPR001471AP2/ERF domain
CDDcd000186.95E-262483No hitNo description
SuperFamilySSF541712.16E-192483IPR016177DNA-binding domain
PROSITE profilePS5103220.5872481IPR001471AP2/ERF domain
PfamPF008472.8E-102573IPR001471AP2/ERF domain
PRINTSPR003673.8E-72536IPR001471AP2/ERF domain
PRINTSPR003673.8E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MENSHEQEHD HATALPQEDR GSRQFKGIQL RKWGKWVSEI RIPKSRKKIW LGSYATPEQA  60
ARAYDAAVYC LRGPNAKFNF PESVPDIPCA SSLSREQIQD AALTHALGQP PSSSCSLTGQ  120
ALRPQSSNLG SEMDLSRDEQ IISEEWFDLA LWFSLCAESD GTGHLNLENL PSIDEVSPLE  180
MTSSWQEQEQ QQEDYISTNL WNFQDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMR53e-87B8LMR5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-37ERF family protein