PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038660-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 432aa    MW: 48429.3 Da    PI: 9.0206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038660-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.3e-121041382256
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++ p  ++++ LA +l+L  rqV vWFqNrRa+ k
  PSME_00038660-RA 104 EQVPEPKQKQALALQLNLLPRQVEVWFQNRRARTK 138
                       67899****************************98 PP
2Homeobox55.78.5e-18300354256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+  +++eq   Lee F knr p  ++++ LA +l+L  rqV vWFqNrRa+ k
  PSME_00038660-RA 300 KKKLILSREQCALLEERFLKNRVPEPKQKQALALQLNLLPRQVEVWFQNRRARTK 354
                       6777899**********************************************98 PP
3HD-ZIP_I/II80.72.3e-261051712288
       HD-ZIP_I/II  22 ekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       +  ep++K++la +L+l prqv+vWFqnrRARtk+kq+E+d+e Lkr+ ++l+ en++L+ke e+ r
  PSME_00038660-RA 105 QVPEPKQKQALALQLNLLPRQVEVWFQNRRARTKLKQTEMDCELLKRCNESLVLENRKLHKELENQR 171
                       5569*********************************************************998765 PP
4HD-ZIP_I/II96.92.1e-31300388190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk+ ls+eq +lLEe F +++  ep++K++la +L+l prqv+vWFqnrRARtk+kq+E+d+e Lkr+ ++l+ en++L+k+ e+Lr +
  PSME_00038660-RA 300 KKKLILSREQCALLEERFLKNRVPEPKQKQALALQLNLLPRQVEVWFQNRRARTKLKQTEMDCELLKRCNESLVLENRKLHKKLENLR-A 388
                       58999*************99999****************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.0E-568144IPR001356Homeobox domain
PROSITE profilePS5007112.374101140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-11102144IPR009057Homeodomain-like
SuperFamilySSF466891.5E-10103141IPR009057Homeodomain-like
PfamPF000467.6E-10104138IPR001356Homeobox domain
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
CDDcd000860.00157123141No hitNo description
SMARTSM003403.2E-14140183IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF466894.71E-17296357IPR009057Homeodomain-like
PROSITE profilePS5007116.568296356IPR001356Homeobox domain
SMARTSM003891.4E-14298360IPR001356Homeobox domain
PfamPF000466.0E-15300354IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-16300361IPR009057Homeodomain-like
CDDcd000861.18E-7300357No hitNo description
PROSITE patternPS000270331354IPR017970Homeobox, conserved site
SMARTSM003401.2E-14356399IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSNGGCSDRS AGKAKVPILP VPVSWLSDAD KFPVSCYYNE DAGTINVSSS NNTFDSNATN  60
PVSRYDMFKR KRGATEELEN DLLCSSSSVE EEGCSKKKLI LSREQVPEPK QKQALALQLN  120
LLPRQVEVWF QNRRARTKLK QTEMDCELLK RCNESLVLEN RKLHKELENQ RALKMSYALT  180
PAATLTMCPS CERVSNADTN SHFTFAKVNG GCSDRSAGKA KVPILPVPVS WLSDAYKIPV  240
SCYYNEDAGT INVSSSNNTF DSNATTPVSR YDMFKRKRGA TEELENGLLC SSVEEEGCSK  300
KKLILSREQC ALLEERFLKN RVPEPKQKQA LALQLNLLPR QVEVWFQNRR ARTKLKQTEM  360
DCELLKRCNE SLVLENRKLH KKLENLRAVK LSSALTPAAT LTMCPSCGRV SDADTNSHFT  420
FAKVKSTLRG AH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348356RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848871.15e-48homeobox-leucine zipper protein HAT22
SwissprotA2Z4C41e-40HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
SwissprotP466041e-40HAT22_ARATH; Homeobox-leucine zipper protein HAT22
SwissprotQ7G7371e-40HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLA9NKN48e-62A9NKN4_PICSI; Uncharacterized protein
STRINGERN104522e-47(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-34HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]