PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038732-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 487aa    MW: 54445.2 Da    PI: 5.7351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038732-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-163483255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +gr++AeIrdp++   + r +lg+f+taeeAa a++ a+++++g
  PSME_00038732-RA 34 RYRGVRRRP-WGRFAAEIRDPKT---KERRWLGTFDTAEEAACAYDFAARAMRG 83
                      69*******.**********954...4999*********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-283490IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-203491IPR016177DNA-binding domain
PROSITE profilePS5103222.2473491IPR001471AP2/ERF domain
CDDcd000184.28E-303490No hitNo description
SMARTSM003803.0E-333497IPR001471AP2/ERF domain
PfamPF008475.3E-103483IPR001471AP2/ERF domain
PRINTSPR003673.8E-93546IPR001471AP2/ERF domain
PRINTSPR003673.8E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKSQQQQSEL QKNESLSPNK LSEKQFKRGK EAGRYRGVRR RPWGRFAAEI RDPKTKERRW  60
LGTFDTAEEA ACAYDFAARA MRGIKARTNF IYLNSEHCML STPPPASLTG STFPTNIKDP  120
FSHKPQKLQD SWLDCLWRDS STTRPGPCDE AKQQQQKQQF SVNGGYNMLG NTVSSLRPSN  180
NEIENNNNQL LAGAGSSSVV PVSLPRDHHS INASTWQNLP LADPILLSLS KNTMDHTHRS  240
TIPSPVSSST TCSSVTKISD HKPAFNNNIT ITPENAIPLS NPVESVYFLP CLEEPASEVC  300
SPVSPYSYTL SSNVEHQFQN LTDSNGHSDS GLLDQIISGY LPMSVSATSP ASSVCTPKYF  360
SNNNTLNCAV CVPQENYSTI TPTCTGFNTT DHIMADLERF IETNYIGLYF NPEAQQQPQD  420
HQQQPQDQPQ QQQQQEANNF NSTHFSAPYP YTDYLFSMPP ISDALEEILH LTPELFDSQQ  480
YDNAYYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-212990971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-13DORNROSCHEN-like