PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038811-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 813aa    MW: 86570.1 Da    PI: 7.2499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038811-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.6e-16552598455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  PSME_00038811-RA 552 VHNLSERRRRDRINEKMRALQELIPHC-----NKSDKASMLDEAIEYLKTLQ 598
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.44E-16544602No hitNo description
SuperFamilySSF474591.11E-19545606IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-20545606IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.854548597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-13552598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-17554603IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MPWSGRNSTP VRPTAGNEQG GLCSRIADKS YKEPPGPNEY LLSQQIDLKD SMNHCVPNWD  60
IENGMMQSSD FLSMAKANWD NVQPPKRSMM LEHDIEELLW ENGQVVNKVV KRPLPTQLSK  120
TLQNDDAVLP GKPSPVGKDN TMELVVHDMS AANASSIHED VMDSWLHYPL DDSLEKEYCS  180
DFFGGMPSTN VHMLRDTLSG QMNNVPAEKV SNLHVQKESS LSSESNSAPW TGVFAGTVNT  240
TNAAGPSKTG KESPSKSISS DKAMALGAGR ASGTIPQSVT DAFAKVRTVS QLPVSKWHTD  300
VQDSSRSKDD HLACKKTATQ VSVSPLSMPP PKIQATDLAS MKPSRSKIVN FSHFSRPAAT  360
MKANLQSIGS ASGLSTTGIQ NRLDKIRMDG NAAAEPSIIE SNSTGMTTIG SSSGANSRAQ  420
DIGSCQTHQN PPSGKNLDVA TCSEDVTDSS AKASEQGVCQ NSNAGRSLAS CGTEKCGDAG  480
DGPEPTITSS SGGSGYSAGR VGKEATNTSK RKGRDVEDSE CQSEDVEYES ADTKKQGPSR  540
TTTSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPHCNK SDKASMLDEA IEYLKTLQLQ  600
VQIMSMGGGM GMVFPGGMQH FQVPQMAHMS PMGMGIGMGY SMGMLDMAAT SGRPVMSLPS  660
MHVSALPGSA IHCQAALPLS GMPGPSLPMS RLPGPGLQVS GLPVSTLPVS GLHGTTQPGL  720
VSTSAPGSTD LQDHMQNANV MGHYKHYMNN HHQMQGPPQV INGNLYNASM AQPPPQNPVQ  780
SSGRGIHNAA IASGKTGTTG KHYDCYCSFV LGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1556561ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1235690.0BT123569.1 Picea sitchensis clone WS04714_N07 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-39phytochrome interacting factor 3