PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038964-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 341aa    MW: 38166.8 Da    PI: 9.1106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038964-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91.1e-123683455
               AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +GV++++ +gr++AeI+dp++   ++  +lg+++taeeAa a+  a+++++g
  PSME_00038964-RA 36 RGVCRRP-WGRFAAEICDPKT---KQLRWLGTYDTAEEAACAYAFAARAMRG 83
                      8******.**********954...4999****************99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.4E-233497IPR001471AP2/ERF domain
PROSITE profilePS5103217.5043491IPR001471AP2/ERF domain
PRINTSPR003673.8E-53546IPR001471AP2/ERF domain
CDDcd000186.59E-123690No hitNo description
PfamPF008474.5E-73683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-223690IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-173691IPR016177DNA-binding domain
PRINTSPR003673.8E-55773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKSQQQRSEL QKNESLSPNK LSEKQFKRGK EAGRDRGVCR RPWGRFAAEI CDPKTKQLRW  60
LGTYDTAEEA ACAYAFAARA MRGIKARTNF IYLNSEHCML STPTPPASLT GFAFPTNIKD  120
PFSHKPQKLH DSWPDCLWRD SSTTRPRPCD EDKQQQKKQQ FSVNGGYNML GSTVSSWRPS  180
NNEIENNNNQ LLAGAGSSSV VPVSLPRDHH SINSSTWQNL PLADPLLLSL SKNTIDHTHR  240
STIPSPVSLS TTCSSVTKIS DHKPAFNNNI TITAENAIPL SNPVESVYFL PCLEEPASEE  300
VEQMKSSKGI TTGYEFKNPK RNRDGCRDTL KSWLRSPTPD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-142990971Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-18ERF family protein