PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039002-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 202aa    MW: 22960.4 Da    PI: 5.5765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039002-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-30114170258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +Dg++WrKYG+K vk+s++pr+Y+rC+ ++C vkk ver a+d+++v++tY g+Hnh
  PSME_00039002-RA 114 EDGFKWRKYGKKFVKNSPNPRNYFRCSNSDCDVKKTVERHANDEEIVITTYLGKHNH 170
                       8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-30102173IPR003657WRKY domain
SuperFamilySSF1182908.89E-27105173IPR003657WRKY domain
PROSITE profilePS5081128.839108173IPR003657WRKY domain
SMARTSM007743.6E-33113172IPR003657WRKY domain
PfamPF031061.4E-23114170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MANFGSTVGY FEACEGQSQL LQGPNNLQHM NQGTQPFDPM DFLVSEEEFD HSCEDTCDQA  60
YNSGATTLLE NADSVTQTHE SLQTISSETN IKKRKVEQPL KYAFLTRSKT DILEDGFKWR  120
KYGKKFVKNS PNPRNYFRCS NSDCDVKKTV ERHANDEEIV ITTYLGKHNH GSPCVIYYIG  180
NPEILQFPRQ TTSSPIEHFS GI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-221061741078Probable WRKY transcription factor 4
2lex_A1e-221061741078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C95e-47A0A0D6R4C9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.26e-30WRKY DNA-binding protein 57