PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039003-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 211aa    MW: 23795.2 Da    PI: 6.3938
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039003-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.3e-29123179258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +Dgy+WrKYG+K vk++++pr+Y+rC+ ++C vkk ver a+d+ +v++tY g+Hnh
  PSME_00039003-RA 123 EDGYKWRKYGKKFVKNNPNPRNYFRCSNSNCDVKKTVERHAHDEGIVITTYLGKHNH 179
                       8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-30111182IPR003657WRKY domain
SuperFamilySSF1182901.06E-26115182IPR003657WRKY domain
PROSITE profilePS5081128.805117182IPR003657WRKY domain
SMARTSM007741.8E-33122181IPR003657WRKY domain
PfamPF031063.7E-23123179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MANFDSTVGY FEGAIKVPSK GQSQPLQGPD NLQHMNQETQ QFDPLDFLAS EEEFDDSCED  60
TANQADNFNT VNSGPSTLEY ADSVIQTHES LQTISSKTNT KKRKAEQPLK YAFLTRSKTD  120
SLEDGYKWRK YGKKFVKNNP NPRNYFRCSN SNCDVKKTVE RHAHDEGIVI TTYLGKHNHG  180
SPCVIYYIGK PEILQLPSQT TSSPTEHFSG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-221151821077Probable WRKY transcription factor 4
2lex_A3e-221151821077Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457906.12e-36PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A0D6R4C95e-51A0A0D6R4C9_ARACU; Uncharacterized protein
STRINGXP_008457906.17e-36(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.17e-29WRKY DNA-binding protein 51