PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039098-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 277aa    MW: 31889.6 Da    PI: 6.6674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039098-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.2e-28176233259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K vk+s++pr+Y+rC+ ++C vkk ver+ +d+ vv++tY g+H+he
  PSME_00039098-RA 176 EDGYKWRKYGKKFVKNSPNPRNYFRCSDSNCDVKKTVERDPRDKGVVITTYLGRHTHE 233
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-29164235IPR003657WRKY domain
SuperFamilySSF1182905.89E-26167235IPR003657WRKY domain
PROSITE profilePS5081128.151170235IPR003657WRKY domain
SMARTSM007741.6E-31175234IPR003657WRKY domain
PfamPF031069.8E-23176233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
SSLTLERVQY AGALTYPNWF IRFCDFRREV TAMANVDPRI GHFQAAFKAL SNEQIQLLQE  60
ANCSLHFSEE AEEFEPSDFL DLEEDFNNSC KTEDADDRAY NFNIVKTGPS SQREYAHSVP  120
SNPPCMQGLH LDHNPTVIQT PDQSPETINP KKSRKRKAEQ ALKYAFLTRS QTDILEDGYK  180
WRKYGKKFVK NSPNPRNYFR CSDSNCDVKK TVERDPRDKG VVITTYLGRH THESPCVIYY  240
IGKPEMLQLP HQSTGSTVLQ HLSPVCNYVP ESFEQHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20168235774WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C91e-51A0A0D6R4C9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-29WRKY DNA-binding protein 51