PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039099-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 240aa    MW: 27306.7 Da    PI: 7.2344
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039099-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.36.6e-28144201259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K vk+s++pr+Y+rC  ++C vkk ver+ +d+ vv++tY g+H+he
  PSME_00039099-RA 144 EDGYKWRKYGKKFVKNSPNPRNYFRCLDSNCDVKKTVERDPRDKGVVITTYLGRHTHE 201
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-29132203IPR003657WRKY domain
SuperFamilySSF1182901.57E-25135203IPR003657WRKY domain
PROSITE profilePS5081127.806138203IPR003657WRKY domain
SMARTSM007749.5E-30143202IPR003657WRKY domain
PfamPF031062.3E-22144201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MANVNPRIGH FQAAFKALSK EQIQLLQEAN CSLHISEEAE EFEPSDFLDL EEDLSNSCKT  60
EGADDRAYNF NIVKSGPSSQ REYAHSLPSN PPCVQGLHLD HNPTVIQTPD QSPETINPKK  120
SRKRKAEQAL KYAFLTRSQT DILEDGYKWR KYGKKFVKNS PNPRNYFRCL DSNCDVKKTV  180
ERDPRDKGVV ITTYLGRHTH ESPCVIYYIG KPEMLQLPHQ STGSTVLQHL SPVCNYVPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-201362031077Probable WRKY transcription factor 4
2lex_A6e-201362031077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C92e-51A0A0D6R4C9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.16e-29WRKY DNA-binding protein 51