PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00039100-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 255aa MW: 28463 Da PI: 6.7602

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00039100-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	14	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++++ +G g+W+ I+++ g gRt++++k++w+++l PSME_00039100-RA 14 RGAWTAKEDMILSQYIQIHGDGSWRNIPKKAGrlPGRTDNEIKNYWNTHL 63 89*********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-21	5	69	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.768	9	67	IPR017930	Myb domain
SuperFamily	SSF46689	4.38E-15	9	69	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-13	13	65	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	14	63	IPR001005	SANT/Myb domain
CDD	cd00167	3.46E-13	16	63	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRSPCCSEE GLNRGAWTAK EDMILSQYIQ IHGDGSWRNI PKKAGRLPGR TDNEIKNYWN 60 THLTKKMLSM AQSQHNSTKN LKTRSKTTPV KVPVFKTTPV RIKTVVRQPE MEILSGSNGY 120 GCSYLSSHKV FNSCNVKETT NSSKACCDVL VNHAIIADDS DRIPFSPADN NMVGMEARNC 180 NIPMLSLGEE RTPDYNYFAG LPESLLNLNN LYSPDCNLLS SLLDAESEEF CNSFTNADSQ 240 AMEKFFDNTT HTLDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LMJ6	2e-66	B8LMJ6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	8e-23	myb domain protein 111