PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039150-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 239aa    MW: 26300.6 Da    PI: 6.7621
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039150-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-102464148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+ + +E+el++ ++++lG++ W++     + gRt++++k++w+++l
  PSME_00039150-RA 24 RGNISSDEEELIIGLHRLLGNR-WSL-----P-GRTDNEIKNYWNTHL 64
                      78999*****************.**9.....9.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.681118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-10430IPR009057Homeodomain-like
SuperFamilySSF466891.01E-15469IPR009057Homeodomain-like
PROSITE profilePS5129418.7091968IPR017930Myb domain
SMARTSM007173.0E-62366IPR001005SANT/Myb domain
PfamPF002495.5E-82464IPR001005SANT/Myb domain
CDDcd001672.68E-72864No hitNo description
Gene3DG3DSA:1.10.10.601.3E-133164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGLKRSGKSC RMRWLNYLRP DIKRGNISSD EEELIIGLHR LLGNRWSLPG RTDNEIKNYW  60
NTHLSKKLSV MTEFNSKRGS SPSANGEQGI AKCKAMRAAT TSMVNNCSDE IGMSLKASCT  120
VIGMNLKASS TVAKMDSSKS LWQLVLEDSD MKTVHADSAC STFPTSIDLS DFPSSDEIAG  180
NRADTDAYSD IFSDSNGDFN LFSSPFDSPI DMRVVGFWTG GLPAQSGRGF LLISQWQLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1656840108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264425.11e-36PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U8ANL83e-35A0A1U8ANL8_NELNU; transcription repressor MYB6-like
STRINGXP_010264425.16e-36(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-34MYB family protein