PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039285-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 550aa    MW: 60206.7 Da    PI: 7.7693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039285-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-08344389454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + Er+RR++++++fe Lr+  P       ++ +Ka+iL  + eY+ sL
  PSME_00039285-RA 344 HHMISERKRREKLKESFEALRSFFPRG-----GRKDKASILGYTREYLTSL 389
                       68899*******************987.....899************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-1213143IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.70E-10339394No hitNo description
PROSITE profilePS5088813.351340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14342411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-10343388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-6344389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-7346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1702.4E-5389410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MMDFIFYLDE QSLQQIMKSI VIPLGWTYIA LWSLDQQAPE LACKDGWFNP EMETGSSTAQ  60
SLGLTFFNLY KLCRFALDAG VPGLALNQPP YVWLTGNELL HFSSDESQKQ FYKVAGIQTA  120
VFIPCGIGVI ELGTTNLVQA DEQNKLRISS LLGSLIMTPN VSAPMPGTSI STSSCSSLLD  180
SPESSSMVSY LHYPTITTSD QMNIVPTNTQ QYSMSASKLP TGFYPYLQTL QLPSSNSGLL  240
ISGHDQWPGS SQQISASNLL LFPHTSQASS FPVAPSARNM MLGAFSTWTP PSQLVTPPVV  300
PSQHKLKRCL TILRNIHAQK LGQISMSGSN YRPPGGSVSS SQVHHMISER KRREKLKESF  360
EALRSFFPRG GRKDKASILG YTREYLTSLK SRVEVLEQKN KQLESELNKF TRTQAQSEKG  420
AGTGTALQQQ PGSTSAEGCD CVVTVEASKI SSNTASACDE MEIVVVVERP TNTIDLMIAL  480
LKRLREMGVP LISMATSTAQ PHPENDPSRL QFRMTATIKL QDQELERVKE GLVSAVKKDG  540
GSPPPPPPSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348353ERKRRE
2349354RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-18bHLH family protein