PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039447-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 159aa    MW: 17533 Da    PI: 6.5001
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039447-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.12.2e-4171061100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk++++kC+++Cvlapyfp+++p+kf  vh++FG+ +v+kll++lp e+r+da+ss+vyeA  r rdPv+G+vgvi++lq+++++l+++
  PSME_00039447-RA   7 PCAACKIQKKKCSEKCVLAPYFPQSNPHKFLLVHRVFGNGHVIKLLQDLPAEQRKDAVSSMVYEASQRFRDPVHGCVGVISDLQKKVAELQSQ 99 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00039447-RA 100 LASTQTE 106
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.5396107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-407104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSEVTSPCAA CKIQKKKCSE KCVLAPYFPQ SNPHKFLLVH RVFGNGHVIK LLQDLPAEQR  60
KDAVSSMVYE ASQRFRDPVH GCVGVISDLQ KKVAELQSQL ASTQTELANI SVQHANLLTL  120
ITGYHEVSDP KLYSASPQES GDTDMSSPDA DPLPLWEQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-37610710111LOB family transfactor Ramosa2.1
5ly0_B7e-37610710111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019458820.11e-53PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK082e-52LBD11_ARATH; LOB domain-containing protein 11
TrEMBLB8LQI92e-77B8LQI9_PICSI; Uncharacterized protein
STRINGXP_004487250.19e-53(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.17e-55LOB domain-containing protein 11