PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039531-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 734aa    MW: 81268.4 Da    PI: 6.3575
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039531-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.9e-11358414155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aak ++ a++k++g
  PSME_00039531-RA 358 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDKEEKAAKSYDLAALKYWG 414
                       78*******************77776664446655.779999**************98 PP
2AP2461.3e-14459508355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PSME_00039531-RA 459 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 508
                       9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.92E-18358422No hitNo description
SuperFamilySSF541713.27E-13358424IPR016177DNA-binding domain
PfamPF008476.4E-8358414IPR001471AP2/ERF domain
PROSITE profilePS5103216.898359422IPR001471AP2/ERF domain
SMARTSM003808.3E-22359428IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-11359423IPR001471AP2/ERF domain
PRINTSPR003672.1E-6360371IPR001471AP2/ERF domain
CDDcd000183.94E-25457518No hitNo description
SuperFamilySSF541711.05E-17457518IPR016177DNA-binding domain
PROSITE profilePS5103219.23458516IPR001471AP2/ERF domain
SMARTSM003802.9E-34458522IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-18458516IPR001471AP2/ERF domain
PfamPF008472.5E-9459508IPR001471AP2/ERF domain
PRINTSPR003672.1E-6498518IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MKYMNNWLAF SLSPHLAIDV SASADQSAQP HQLSSVPTSF NCLQTSQMPR STLPYQSYGV  60
NSENGGNSFY APMPLKSDGS LCIMEALGRS QIEEWHDLKP PGLQAGRVQS PNVMGSRLSS  120
SDSQYEITPN GASNHGSPKL EDFLGGASLG SHEYSASARD HQSMSLSLQN SIYFDHNVGE  180
DNNGSCKMIN VNQMPYSECR RMGVPSSFHT YGDNGNNTYE AAMHDQGLSQ PNMFADCSLQ  240
FNPPGPGIIE NPSSCMVGIS AMKTLLRQYP NGGSSDKNST NESHETLNNI GDLQSQALTL  300
TMSPGSQSSS VTIVPHSGTN TECVAVETSR KRVAGSKSGN TRQPVPRKSI DTFGQRTSQY  360
RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQGGYDKEEK AAKSYDLAAL KYWGPSTHIN  420
FPLNTYEKEL EEMKHMTRQE YVANLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG  480
NKDLYLGTFS TQEEAAEAYD IAAIKFRGTN AVTNFDISRY DVKRILASNT LLVGELARLN  540
RDQLAEPLTA EPDQVDVPIV IHQIANEKYN AKETDYEDED TKNNWQMQMS GDQEQNQINS  600
CSNEASDHDK MWDDQKPSQS FTESQHLAAL HNLMGLDHAE RNEDSSHNNK NNSLLSDMSA  660
SDPRSPGASM GREEHEEEAA LSPSGQNENG LFFSSKQPAL QINNALSSWM TQAARPALNS  720
MAHHIPMFAS WNDT
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1005551e-127BT100555.1 Picea glauca clone GQ0025_E20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84Z021e-123CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLQ2Z2G40.0Q2Z2G4_GINBI; AINTEGUMENTA-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-119AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]