PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039541-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family VOZ
Protein Properties Length: 241aa    MW: 26431.7 Da    PI: 4.0517
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039541-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ122.54e-38141226186
               VOZ   1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaata 86 
                       ppp aflgpkcal dc+rpaqgs+w+qdyc +fh ++alneg+pg+ pvlrp+gidlkdgllfa+l ak+  k  gi ec+g +t+
  PSME_00039541-RA 141 PPPEAFLGPKCALLDCPRPAQGSNWCQDYCRNFHGMVALNEGPPGMGPVLRPRGIDLKDGLLFATLGAKTVVKYFGITECQGVTTK 226
                       89********************************************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLEASLCSSD LSCDMWNLLQ LHEEEDDATS ILVAPYSSKL QLNENTLDAT NPSSFQEVIP  60
PNEIRKDFYV DHANAEAQNI DGTSSSENIL TESLLQTTNE GLEAAAQMNQ DFDHNICLSL  120
DPEVEEEHIP KFQGPCPGIS PPPEAFLGPK CALLDCPRPA QGSNWCQDYC RNFHGMVALN  180
EGPPGMGPVL RPRGIDLKDG LLFATLGAKT VVKYFGITEC QGVTTKIITL ECSWYGINIL  240
Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28520.23e-44vascular plant one zinc finger protein