PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039572-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 245aa    MW: 27857 Da    PI: 7.4317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039572-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-181868256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr++  +g+WvAeIr p++   r+r +lg+f tae Aa a+++a+ +++ge
  PSME_00039572-RA 18 HYRGVRQRQ-WGKWVAEIRLPRN---RTRLWLGTFETAEAAALAYDRAAYRWRGE 68
                      8*****999.**********955...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-201776No hitNo description
Gene3DG3DSA:3.30.730.101.9E-301776IPR001471AP2/ERF domain
PROSITE profilePS5103223.1691875IPR001471AP2/ERF domain
SMARTSM003802.0E-331881IPR001471AP2/ERF domain
PfamPF008471.4E-121868IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-221876IPR016177DNA-binding domain
PRINTSPR003676.6E-111930IPR001471AP2/ERF domain
PRINTSPR003676.6E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEMQHKSSVA ARHPMRKHYR GVRQRQWGKW VAEIRLPRNR TRLWLGTFET AEAAALAYDR  60
AAYRWRGECA RLNFPHFFSK NNQDSYTSST NGRISRLSTE KPDQKYAYNG DPVYINVYKG  120
DPVRVIAYNG DPDQINVCKS EPARITAHND DPVCNTASLA ESKPESSSSH ASSPAKVERF  180
IWEEEDENWL NNLPVLEADM TWDVLSGCSD LDAERNQSRT CVLQTENACL TSGKFELKGV  240
GLGYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-221775463ATERF1
3gcc_A3e-221775463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NNQ81e-114A9NNQ8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-24ERF family protein