PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039616-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 258aa    MW: 28674.7 Da    PI: 6.628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039616-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17129179255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp +  k +r++lg+f ta+eAa a+++a+  +++
  PSME_00039616-RA 129 HYRGVRRRP-WGKFAAEIRDPAK--KGARVWLGTFNTAKEAALAYDRAAYTIHN 179
                       7********.**********954..34**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-25128181IPR001471AP2/ERF domain
PfamPF008473.8E-12129179IPR001471AP2/ERF domain
PROSITE profilePS5103221.417129188IPR001471AP2/ERF domain
SMARTSM003801.2E-24129194IPR001471AP2/ERF domain
CDDcd000183.72E-24129181No hitNo description
SuperFamilySSF541713.92E-19129181IPR016177DNA-binding domain
PRINTSPR003672.1E-10130141IPR001471AP2/ERF domain
PRINTSPR003672.1E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEVPGSVSIN ILNVLELIRH HLLEEEDDID FLDVLHHHPA GGNPSMSSSP TASGGGDYVR  60
AATTTSGSCQ NRSSSRSTSG DNGNEYTQQL VHEDYSFSPN SHVICADIIR RAETLKVNPQ  120
ANDEENGRHY RGVRRRPWGK FAAEIRDPAK KGARVWLGTF NTAKEAALAY DRAAYTIHNR  180
NEMSDQFHHH LGGSKAASSS FKTLYPTLGM SFRWLEGGFF FNQDIISNFG DVLTMAVLSI  240
EERICHNERS SSNPFHPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-25127175351ATERF1
3gcc_A9e-25127175351ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ74e-41A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-25ethylene responsive element binding factor 1