PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039617-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 238aa    MW: 26147.9 Da    PI: 7.721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039617-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.9e-18131182256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp +  k +r++lg+f ta+eAa a+++a+ +++g+
  PSME_00039617-RA 131 HYRGVRRRP-WGKFAAEIRDPAK--KGARVWLGTFNTAKEAALAYDRAAFRIRGA 182
                       7********.**********954..34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-30130189IPR001471AP2/ERF domain
CDDcd000181.50E-29131189No hitNo description
SuperFamilySSF541711.57E-22131190IPR016177DNA-binding domain
PfamPF008475.7E-13131181IPR001471AP2/ERF domain
SMARTSM003802.3E-34131195IPR001471AP2/ERF domain
PROSITE profilePS5103224.092131189IPR001471AP2/ERF domain
PRINTSPR003671.9E-10132143IPR001471AP2/ERF domain
PRINTSPR003671.9E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEVTGSVSIN ILNVLELIRH HLLEAEDDID FLDVLHHHPA GGNPSMSSSP TASGGGDYVR  60
AATTTSGSCQ NRSSSSRSTS GDNENEYTQQ LVHEEDYSFS PNSHVICADI IRRAETFKVN  120
PQANDEENGR HYRGVRRRPW GKFAAEIRDP AKKGARVWLG TFNTAKEAAL AYDRAAFRIR  180
GARALVNFPL AITSNSENGS AVGHMVHKRK RSEEETVAIQ WNGAGGMGSE ELRACKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-34128194268ATERF1
3gcc_A5e-34128194268ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA36e-64A9NMA3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.15e-35ethylene responsive element binding factor 1