PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00039747-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 482aa MW: 52670.3 Da PI: 6.3498

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00039747-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.8	5.9e-11	313	360	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P++ +k Ka +L + ++Y++sLq PSME_00039747-RA 313 SHSLAERVRREKINQRMKFLQDLVPTC----NKVTGKAVMLDEIINYVQSLQ 360 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.54E-12	307	364	No hit	No description
SuperFamily	SSF47459	1.22E-17	307	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.967	309	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-18	309	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-8	313	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-11	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MDSDFGMEHQ AFKTVPDSKS LASLHSSLSC SFNTMDTIFG DESRYSQKCV GEFEEIASQN 60 AFGGAPEGLI SNADGAFFAD PAFSAKYLQK PSFPPVMAKE ISNADGSGGI AGQNIPILPN 120 SVHFHTPGVK NGVNSASWRN LEASHHGSEV SKFSIGNAPS TLVQFPSDPG FVEQAAKFSS 180 FNNIDCSSSG NVVRGPSNLR PIVGGVRPPV GGVSQGGGED MSVISEPTKC MDDGNGRKRR 240 TKSLTSAENA KEPEEAKAKR CRLGENSEID DDDNNDETSD SNSKKGKDKS SKGAQKDDNY 300 IHVRARRGQA TDSHSLAERV RREKINQRMK FLQDLVPTCN KVTGKAVMLD EIINYVQSLQ 360 HQVEFLSMKL ATVNPKLDFN IDNFLAKEMS GSFSSKGLSP TYFHLDQLKQ GSLQTVPSPG 420 SDIPSTMSSV DSAEMFDGAN FQRQDGWESE LQNMYNMGLL QSRLQQQQQH HQHQHQHQQR 480 PL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MDSDFGMEHQ AFKTVPDSKS LASLHSSLSC SFNTMDTIFG DESRYSQKCV GEFEEIASQN  60
AFGGAPEGLI SNADGAFFAD PAFSAKYLQK PSFPPVMAKE ISNADGSGGI AGQNIPILPN  120
SVHFHTPGVK NGVNSASWRN LEASHHGSEV SKFSIGNAPS TLVQFPSDPG FVEQAAKFSS  180
FNNIDCSSSG NVVRGPSNLR PIVGGVRPPV GGVSQGGGED MSVISEPTKC MDDGNGRKRR  240
TKSLTSAENA KEPEEAKAKR CRLGENSEID DDDNNDETSD SNSKKGKDKS SKGAQKDDNY  300
IHVRARRGQA TDSHSLAERV RREKINQRMK FLQDLVPTCN KVTGKAVMLD EIINYVQSLQ  360
HQVEFLSMKL ATVNPKLDFN IDNFLAKEMS GSFSSKGLSP TYFHLDQLKQ GSLQTVPSPG  420
SDIPSTMSSV DSAEMFDGAN FQRQDGWESE LQNMYNMGLL QSRLQQQQQH HQHQHQHQQR  480
PL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF085036	0.0	EF085036.1 Picea sitchensis clone WS0297_L11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9CAA9	1e-59	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A9NUN3	0.0	A9NUN3_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]