PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039873-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 317aa    MW: 36005.7 Da    PI: 7.966
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039873-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-18170224256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PSME_00039873-RA 170 RKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTK 224
                       778899***********************************************98 PP
2HD-ZIP_I/II1261.7e-40170260192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       +kk+rlskeq++lLEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  PSME_00039873-RA 170 RKKLRLSKEQSALLEESFREHSTLNPKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 260
                       69*************************************************************************************9.565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.054166226IPR001356Homeobox domain
SMARTSM003892.8E-15168230IPR001356Homeobox domain
SuperFamilySSF466898.17E-18169234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-17170224IPR009057Homeodomain-like
PfamPF000462.1E-15170224IPR001356Homeobox domain
CDDcd000863.97E-14170227No hitNo description
PROSITE patternPS000270201224IPR017970Homeobox, conserved site
SMARTSM003405.3E-22226269IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-11226260IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEETKNKQRG LERLKSLTND DTTGLALGVG LSIAMPAAAL QEDDQKNAPR QLELLPFRPI  60
ASRVGTPPAP SAPFLWFMPN NNSREEVTVA ETNPPVAMRG RIDMNRVPTT NENEESSVFQ  120
ADALRVVENG PLAVKRERER ERAFDFEAER DRTCDVSSRT SDEEEIGSTR KKLRLSKEQS  180
ALLEESFREH STLNPKQKNA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEVLKRCCE  240
NLTEENRRLQ KELQELRALK AAPQPCVIGQ DNYYMPLPAT TLTMCPSCER VATMENNRSL  300
QFSKSQISQF AQQSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174TRKKLRL
2218226RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0859210.0EF085921.1 Picea sitchensis clone WS0271_A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.13e-96homeobox-leucine zipper protein HAT4-like
TrEMBLA9NX560.0A9NX56_PICSI; Uncharacterized protein
STRINGPP1S42_217V6.11e-95(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-67homeobox from Arabidopsis thaliana