PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00039964-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 473aa    MW: 52625.2 Da    PI: 5.317
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00039964-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07389410426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C +f r G+Ck+G++C+F+H+
  PSME_00039964-RA 389 KPCLYFGR-GYCKHGNNCRFSHD 410
                       68999999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5147312.60517118IPR002902Gnk2-homologous domain
PfamPF016571.0E-736115IPR002902Gnk2-homologous domain
PfamPF036416.7E-6135176IPR031100LOG family
Gene3DG3DSA:3.40.50.4504.9E-9144176No hitNo description
SuperFamilySSF1024058.85E-5146188No hitNo description
SuperFamilySSF902299.16E-6385414IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925385412IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-5388410IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-5389412IPR000571Zinc finger, CCCH-type
PfamPF128721.8E-4437472IPR025605OST-HTH/LOTUS domain
PROSITE profilePS5164410.421437473IPR025605OST-HTH/LOTUS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MPLFYSQVNP SDTPSVIRCD DTKLINGTDE NERGVDSQID NLLTRLVGDA VSSNVGYSTL  60
SEEGFCSLAQ CWRDLTMDQC SQCLNSLYKN LSRCPAGTSE GQALISGICI IGYSKNKFYR  120
DGVPLLSSPS TGSSRAIDKG NITSGEAVGE VKAVADMHER KAEMARQADA FFALPGFGCE  180
MDFYEATRIV FSRIQSLEPK NVMKIIGYLL VQDHGDREMI RLAFGPDSLI QSIISKAKKE  240
LGLQVAQSST AQLLSPYNYA PFYHVPSRSS YPAQQTLYWD SQTHQESSLG NSHFSTIPME  300
QSTLSFMGRN SLQDQMFSNE KLHPLTFNEP AVIRDYTLQL QEQQLPLFEN DSYINYPEMQ  360
IGSLNGTKLG MEFFNFGTGK RPTQMADVKP CLYFGRGYCK HGNNCRFSHD ENHLSVSVSA  420
SSSPSGSVNE DPISTGSLER LELELQELLR AKRAPISIAS LPQLYYERYG RTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-