PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040054-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 400aa    MW: 45283.9 Da    PI: 6.3186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040054-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+l++ v+ +G g+W+ +++  g+ R++k+c++rw +yl
  PSME_00040054-RA 14 RGLWSPEEDEKLIKHVTAYGHGCWSVVPKQAGLQRCGKSCRLRWINYL 61
                      788*******************************************97 PP
2Myb_DNA-binding48.12.7e-1567110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++ +E+ l++d+++  G++ W+ Ia++++ gRt++++k++w++
  PSME_00040054-RA  67 RGSFSLQEERLIIDLHRIIGNR-WAQIAKHLP-GRTDNEVKNFWNS 110
                       899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.18961IPR017930Myb domain
SuperFamilySSF466894.87E-2911108IPR009057Homeodomain-like
SMARTSM007172.7E-131363IPR001005SANT/Myb domain
PfamPF002495.3E-151461IPR001005SANT/Myb domain
CDDcd001673.10E-111761No hitNo description
PROSITE profilePS5129424.69862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2565117IPR009057Homeodomain-like
SMARTSM007175.5E-1566114IPR001005SANT/Myb domain
PfamPF002496.9E-1467110IPR001005SANT/Myb domain
CDDcd001679.69E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLIKHVT AYGHGCWSVV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SLQEERLIID LHRIIGNRWA QIAKHLPGRT DNEVKNFWNS CIKKKLIAQG  120
IDLKAHKLLN QAASSQELQE EKSASLIDQG FAVSETRDGL KRVADIRDFV PGNYIDSLLC  180
AGNTDISPYY AIHGGSWMER PSYINCSKPD HEEILYEPNF VNDFRHVISQ RFPALNDYQI  240
SLSQNSEFEN KLLQQPEIIS DPTTFSPEMK CFNRQKHPFS GHDNNPIELG QFDMAAMSNY  300
QGTDQQLDTF VMIPSAGCLS HSSDSGFNPS CDMRRMDLPK LREIETAEPE CTSNQVEANG  360
TRFSSSINGS YGNYGIELLD SAITIAMDSE CINPVTEWNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31141167108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAQ51e-123A0A222UAQ5_GINBI; R2R3MYB28
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.27e-74myb domain protein 26