PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040113-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 839aa    MW: 92243.1 Da    PI: 6.9149
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040113-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.64.9e-095105471954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  PSME_00040113-RA 510 FEHflHPYPKDADKHLLARQTGLTRSQVSNWFINARVR 547
                       564459******************************88 PP
2BELL122.71.5e-39373444172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +rqelq+kkakL+ +l+eVd+rY+qy++q+++v+ssFea+ag g+ak YtslAlk+iSrhFr+L+daia+qi
  PSME_00040113-RA 373 DRQELQMKKAKLVAMLDEVDRRYRQYYHQMHIVVSSFEAAAGFGAAKTYTSLALKTISRHFRSLRDAIAGQI 444
                       699********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.6E-57285442IPR006563POX domain
PfamPF075262.1E-47291441IPR006563POX domain
PROSITE profilePS5007111.969488551IPR001356Homeobox domain
CDDcd000862.44E-12491552No hitNo description
SMARTSM003896.2E-9491555IPR001356Homeobox domain
SuperFamilySSF466898.98E-17492558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28494557IPR009057Homeodomain-like
PfamPF059201.9E-17508547IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MATYFPGSNI QPDTMQTLYL MNPDYTGYAD MQTPSNMVLI NQPTGTPSAH NHLAGSGQSQ  60
QHFIGIPFPT APHPQRYPMA SVESSGGTQQ DVTSSLLSSR LGNHGYNVWR NVGNELTMMQ  120
TTDPSPHNNQ SLSGQLNNFS NLGHQSVSEI SSTGMKRATM SSIPEQQLGM NPNGLGLQLD  180
HSQGLAAHGR GLSLSLSPQQ LSSIQLSCFQ NQPTDSEVNC PSISEATSQE NMNRADRLTG  240
KLPGSLSSFR ASSRDGMLGS KFLGTVNGPE CNKQMHHGTN AIGAAELSNS LTGSKYFKAA  300
QQLLDEVVNV GKGIKSESVN HQKSQTWFGT ISDKKNIATE ATLNDRTTSA ITGPSISAQE  360
MKNEHAFGLT PADRQELQMK KAKLVAMLDE VDRRYRQYYH QMHIVVSSFE AAAGFGAAKT  420
YTSLALKTIS RHFRSLRDAI AGQIRLTSKN LGEEDLTGSG KGETSRLHFV DQQLRQQRAL  480
QQLGMIQQHA WRPQRGLPER AVSILRAWLF EHFLHPYPKD ADKHLLARQT GLTRSQVSNW  540
FINARVRLWK PMVEEMYTEE LREAETQNRG ADSKVTTESG QNNDETVSKE GAGNSENGQE  600
EKSKRNRMLN NNIEEGGYMQ QNGAGNGGFK PDQASDRING RNQTSMTGVS DSHVFHEIDN  660
EDLRQGQQKK IRNGIQDSKM LLTPNMSMDV DLKSEETGSE YILDSSKFAS DEKHASEGYA  720
FANNKMVGLD DSGSFGSYQL GGLGRYGQET FTPKFSGIGG VSLTLGLQHC DDLSLSGTQQ  780
NYNSSQGLGS GRRHDLGSDS DDYCHIQETS AVRRANNYDN MSMQNGKRFA THMLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16497554158Homeobox protein Meis1
4xrs_B2e-16497554158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1176760.0BT117676.1 Picea glauca clone GQ03907_E01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920159.11e-155BEL1-like homeodomain protein 1
RefseqXP_023920160.11e-155BEL1-like homeodomain protein 1
RefseqXP_023920161.11e-155BEL1-like homeodomain protein 1
RefseqXP_023920162.11e-155BEL1-like homeodomain protein 1
RefseqXP_023920164.11e-155BEL1-like homeodomain protein 1
TrEMBLA0A0C9RM180.0A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-94BEL1-like homeodomain 1