PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040172-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 324aa    MW: 35555.5 Da    PI: 8.9993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040172-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15145191354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L ++++++k+L
  PSME_00040172-RA 145 KSHSEAERRRRERINSHMAKLRTLLPST-----TKTDKASLLAEVIDHVKDL 191
                       79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.869142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-12145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-4145193No hitNo description
SuperFamilySSF474591.7E-14146199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.84E-6230302No hitNo description
PROSITE profilePS516718.956230312IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.3E-6231286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNGLDMRGFR DQMKVSASEP SRAPWAAMFA ENRSHGLKSE QIFSLPNDLC GLPRVPDFQG  60
LKFPYSYGGG RINTNNTNNN SLRHQLGVSE MCERMGLYSH FSGVGGAGGG GSRLVLDGVR  120
GELVNAAKMM TPKELLEAKA VAASKSHSEA ERRRRERINS HMAKLRTLLP STTKTDKASL  180
LAEVIDHVKD LKRRASEIAK VNPVPTDVDE LRVEEADGDG NNSEGRIGMK VSLCCDDRPD  240
LLADLIRTLH SLRLRAVKAE ISTLGGRMKN VFIMTSMEEV PEKDQDSPSV NCVQEALRAV  300
MERAASNELS PGSLTSNKRQ RILP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002978655.29e-74transcription factor bHLH30
TrEMBLA0A0D6R7H81e-151A0A0D6R7H8_ARACU; Uncharacterized protein
STRINGAquca_002_01095.13e-64(Aquilegia coerulea)
STRINGEFJ142355e-66(Selaginella moellendorffii)
STRINGEFJ201025e-66(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-51bHLH family protein