PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040180-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 369aa    MW: 41614.9 Da    PI: 9.9402
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040180-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.4e-1353109155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  PSME_00040180-RA  53 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDEEEAAARAYDLAALKYWG 109
                       57*******************66667777755555********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-953109IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1553119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-1254118IPR001471AP2/ERF domain
SMARTSM003804.8E-2054123IPR001471AP2/ERF domain
PROSITE profilePS5103218.46554117IPR001471AP2/ERF domain
PRINTSPR003672.7E-55566IPR001471AP2/ERF domain
PRINTSPR003672.7E-599119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEAGALLAMA PEANESSQSK AGGGGGLKRI SRGSTAKERI SKMPPCAAGK RSSIYRGVTR  60
HRWTGRYEAH LWDKSTWNQN QNKKGKQGAY DEEEAAARAY DLAALKYWGP GTLINFPVSD  120
YARDIDEMQS MSREEYLASL RRKSSGFSRG MSKYCRIARS SQNGRWEPRF NRTVTENRYF  180
NMGNYCEDMQ QVTAYPMSLG DQRSFTAATN IDLSAYIRWW KPKKMHDHVQ VVITEPRSAN  240
VEEAEMLEWQ GKPFEPYQLP SLGVFHRRQH KPSPTSALSI LFKSPLFNQM LERASSASKQ  300
DNIVKIGLKE EQMNSISQEK DRIGFNESGN GLGSFQLSVQ IGTTQVPSLS TLSNARPCIK  360
SHIQNMDIT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2611405e-70JQ261140.1 Pinus radiata isolate 5793 hypothetical protein (0_3610_01) gene, 3' UTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517870.13e-93AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_024518902.13e-93AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK26e-74AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A171PZK21e-116A0A171PZK2_9SPER; WRI2
STRINGVIT_08s0007g08580.t013e-92(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.15e-73AP2 family protein