PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00040197-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 346aa MW: 38992.7 Da PI: 9.2234

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00040197-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	2e-07	170	217	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +E++RR++++ ++L llP+ + ++++ + + L +++eYI++L+ PSME_00040197-RA 170 KVVEKQRRNKMKALCSTLILLLPEEF--NKTRHTLPDKLLEVIEYIRHLK 217 579*******************65..9999**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.061	164	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.18E-7	169	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.33E-7	169	220	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-6	170	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MKNYPYKYPY KPSSTSYSQE AACLPYYIGN IDTDECIQIQ RPIKSIKFVE PGTCIVDDAP 60 APVIFDALTT KKPDDYSLLG TASLGPDVRL DQTDKDGSSL AVTQSWQKFA AMFGDPAQTL 120 TYNSPASSLL NSSRPFFPPT KIHRRKKTAA VEGREHDASR KCIVNGHIRK VVEKQRRNKM 180 KALCSTLILL LPEEFNKTRH TLPDKLLEVI EYIRHLKDKL IEVGDKRDKL NFSATVKPIS 240 NGSCVYKSLQ TSHAQPTNVP EKFQTIRVSK FGPGIQVTVN TFKNQIDFSS LLMVLEEAEV 300 EVVSTTVSAV NDRVFYSIHS KLSDFHHFDR AVLHQRIDQL MNGILP

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MKNYPYKYPY KPSSTSYSQE AACLPYYIGN IDTDECIQIQ RPIKSIKFVE PGTCIVDDAP  60
APVIFDALTT KKPDDYSLLG TASLGPDVRL DQTDKDGSSL AVTQSWQKFA AMFGDPAQTL  120
TYNSPASSLL NSSRPFFPPT KIHRRKKTAA VEGREHDASR KCIVNGHIRK VVEKQRRNKM  180
KALCSTLILL LPEEFNKTRH TLPDKLLEVI EYIRHLKDKL IEVGDKRDKL NFSATVKPIS  240
NGSCVYKSLQ TSHAQPTNVP EKFQTIRVSK FGPGIQVTVN TFKNQIDFSS LLMVLEEAEV  300
EVVSTTVSAV NDRVFYSIHS KLSDFHHFDR AVLHQRIDQL MNGILP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12540.1	4e-09	bHLH family protein