PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040413-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 420aa    MW: 46210.5 Da    PI: 7.7418
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040413-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-1369125155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  PSME_00040413-RA  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDEEEAAARAYDLAALKYWG 125
                       57*******************66667777755555********************98 PP
2AP223.21.7e-07168214150
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaar 50 
                       s+y+G    +++g+W+A+   +   g    +++fs g+  t eeAa+a++   
  PSME_00040413-RA 168 SKYRGLAKQSQTGKWEAS---F---GrvlGNRYFSMGSCSTSEEAAAAYEMSQ 214
                       79****************...8...555446******************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1569135IPR016177DNA-binding domain
PfamPF008471.5E-969125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1270134IPR001471AP2/ERF domain
PROSITE profilePS5103218.46570133IPR001471AP2/ERF domain
SMARTSM003804.8E-2070139IPR001471AP2/ERF domain
PRINTSPR003673.4E-57182IPR001471AP2/ERF domain
PRINTSPR003673.4E-5115135IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-6168228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.4E-4169220IPR001471AP2/ERF domain
SMARTSM003809.5E-4169233IPR001471AP2/ERF domain
PROSITE profilePS5103210.52169227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MASLEAWGKM EGGQVAGLVV ADEVKEQQPK EGNDSDLLKG MKKARRERGS TAKERISKMP  60
PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGAYDEEE AAARAYDLAA  120
LKYWGPGTLI NFPVSDYARD IEEMQSISRE DFLASLRRKS SGFSRGMSKY RGLAKQSQTG  180
KWEASFGRVL GNRYFSMGSC STSEEAAAAY EMSQGEYRGF GTARNIDLSS YIRWWQPNKS  240
LEVEPSAPRH MDESHSMSEE RPTQGDEPET PQWPGQACEP YQLPSLGVPN NGKHNPSPVT  300
ALSILHQSSS FKQMLEKASA KKGKSDKDMD AGDNPENIQL EKGKGKDCLA EDPFGSKEFG  360
CHSGSCQAPG QTSTMFPFAQ VQSVPPIQDC NTTAPVSDSL WTSFVPTTGG VALTNAVSIC
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8173570.0KJ817357.1 Larix gmelinii var. olgensis x Larix kaempferi WRI2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281730.11e-118AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK25e-96AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A171PZK20.0A0A171PZK2_9SPER; WRI2
STRINGVIT_08s0007g08580.t011e-118(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.19e-93AP2 family protein