PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00040473-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C3H

Protein Properties

Length: 1562aa MW: 171994 Da PI: 6.9281

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00040473-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.9e-07	278	298	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C++f r G C++G++C+F H PSME_00040473-RA 278 PVCNDFTR-GRCQRGASCRFLH 298 67****.*********** PP
2	zf-CCCH	18.4	3.9e-06	475	495	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C+ffar G C+ G++C+F H PSME_00040473-RA 475 PTCMFFAR-GCCRNGSSCRFLH 495 78****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.596	274	301	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0043	275	300	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-4	278	298	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.5E-5	279	299	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.69	373	400	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0024	373	399	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.939	471	498	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0011	471	497	IPR000571	Zinc finger, CCCH-type
Pfam	PF04970	7.8E-13	1414	1461	IPR007053	LRAT-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1562 aa Download sequence Send to blast
MICWILFQEA AFEVPRVEDV SPARTLQELQ HTLTSEKSNV KNFPNSKEDL PVIPNTVSEI 60 DAFPGNSQEV VLTGSVHKSV GKSMGVDSES EKVILAEKRS ELNFEHDDME SRKIEAVKPC 120 NEGKSFNEGS HSDNRDQNVS LNDNISLEVV HKKPNIMLGQ DNVKSEVQLR LKPDGRAMKT 180 DKYGRLIREG NSDSESDGGL YAARGRTGHT QSRSPSPGHK RWRKRSYSRS PRRKNRWSVS 240 RSRSPKRRRS RSRTPVHDVR RGSDARGERI NRGRGTAPVC NDFTRGRCQR GASCRFLHWE 300 PSGDSGNRWA GGGRGRERMD NREDVAKSVV GKESFLSGEL DKPRSISPDR FLDEHENHYY 360 GERRNHESYG YNDRAATPCY DFSKGRCYRG SSCRYLHSET ADTVGRWSSV GKGRERTENR 420 QDITQPYGGK DGFGAVEVDK TRNISPHRLH NQHYRHNSRE KRSHELDRGN GRSVPTCMFF 480 ARGCCRNGSS CRFLHLDATG NSGSGRGRER PESRSDIPEP FGRKGSSAAG EIDRNKNLFL 540 ERTSYGHDRR DPFKGNRQET DKHNYSSANP VVKTQFSTSG REKLQSHRED LWSQTLSTEI 600 PSQTNRRENV GGDLMPRDLP SQSLSWDKFD APPSEYPSAP SETDKIDPHN PGEGMPEQPL 660 RIHDLQFQTE NLHSKNVLNS TPFESLAGDL PALLDHSVTG HSLSSGQPLG SECFPSQLHD 720 AWKGSSAAHS NLETNVVSLP SGFSTNSSII KPPAEHSGIG GFSMSYNQNS IMPNLNKVPQ 780 DEFVHDSTVQ EVDFCANDVS THVATASTEQ RSVCAQPSLE LVNLQHSSST GQENLIPKLI 840 TMPVFPSQNQ SGGQIGSVPL ALFSEQNAFP FSQTGGPFTP GLPTVNLPSK DVSGLSGFNQ 900 PNKDILAFSA VHQPSKDLHG ISSAKHISGL SAFNLNQPSK DVPGLSAADQ VNLGISVQQN 960 QYEPLCDGIG HSAGAQESLK KDDNTAITQD VKVVLVEPDK TPLLQNVSPN NKDGQSKLSS 1020 PSRTQGIVGN NKHKDSAELS LKGTESHEAI QTDVQVGIAV AVNGSPRREG KSCSPGHLFE 1080 AVTANAGDIA TESATENAGD TGTDQAHPLD ESKKSKEIRM MKLFRSMLAE FVKDVLKPTW 1140 REGQMSKEAF KTIVKKVVDK VAGSLQSHQI PKSQEKIDQF LEASRQKLTK LVQTDPKDMD 1200 LGHILDDVDF KNSKNIRDAV QKAKTKLNQE VVNLLISDPQ RTQDETQAKI DRVLLKVKRL 1260 DEYFFPGERH VDTIEHDTPF ATGHVSLPSG QSETKNETPQ MEHESVDEDQ GHESAAHIQG 1320 WDKDSRFVRS LCEVPGSNNE PYILHQQCED RSVLRYIYYY LVRILSNNGS QGLSAGGGIP 1380 TPNWDAVADL DAAGGVTRVD VVPRIIQQLS AEASNADVEE SDPPETVIHR AMHLLQNGFG 1440 NYDIFENNCE DFAMFCKTGL SVEKRGLGRS GQALSIIGVP VAAILSSPFG LLFGGPGVAT 1500 VMAGLYCLNR YATDIGIRTD VVKAPVEHLE VNLGCSTSSE PSLAESSATQ AISRDISPIN 1560 ST

Sequence ? help Back to Top

Protein Sequence Length: 1562 aa Download sequence Send to blast

MICWILFQEA AFEVPRVEDV SPARTLQELQ HTLTSEKSNV KNFPNSKEDL PVIPNTVSEI  60
DAFPGNSQEV VLTGSVHKSV GKSMGVDSES EKVILAEKRS ELNFEHDDME SRKIEAVKPC  120
NEGKSFNEGS HSDNRDQNVS LNDNISLEVV HKKPNIMLGQ DNVKSEVQLR LKPDGRAMKT  180
DKYGRLIREG NSDSESDGGL YAARGRTGHT QSRSPSPGHK RWRKRSYSRS PRRKNRWSVS  240
RSRSPKRRRS RSRTPVHDVR RGSDARGERI NRGRGTAPVC NDFTRGRCQR GASCRFLHWE  300
PSGDSGNRWA GGGRGRERMD NREDVAKSVV GKESFLSGEL DKPRSISPDR FLDEHENHYY  360
GERRNHESYG YNDRAATPCY DFSKGRCYRG SSCRYLHSET ADTVGRWSSV GKGRERTENR  420
QDITQPYGGK DGFGAVEVDK TRNISPHRLH NQHYRHNSRE KRSHELDRGN GRSVPTCMFF  480
ARGCCRNGSS CRFLHLDATG NSGSGRGRER PESRSDIPEP FGRKGSSAAG EIDRNKNLFL  540
ERTSYGHDRR DPFKGNRQET DKHNYSSANP VVKTQFSTSG REKLQSHRED LWSQTLSTEI  600
PSQTNRRENV GGDLMPRDLP SQSLSWDKFD APPSEYPSAP SETDKIDPHN PGEGMPEQPL  660
RIHDLQFQTE NLHSKNVLNS TPFESLAGDL PALLDHSVTG HSLSSGQPLG SECFPSQLHD  720
AWKGSSAAHS NLETNVVSLP SGFSTNSSII KPPAEHSGIG GFSMSYNQNS IMPNLNKVPQ  780
DEFVHDSTVQ EVDFCANDVS THVATASTEQ RSVCAQPSLE LVNLQHSSST GQENLIPKLI  840
TMPVFPSQNQ SGGQIGSVPL ALFSEQNAFP FSQTGGPFTP GLPTVNLPSK DVSGLSGFNQ  900
PNKDILAFSA VHQPSKDLHG ISSAKHISGL SAFNLNQPSK DVPGLSAADQ VNLGISVQQN  960
QYEPLCDGIG HSAGAQESLK KDDNTAITQD VKVVLVEPDK TPLLQNVSPN NKDGQSKLSS  1020
PSRTQGIVGN NKHKDSAELS LKGTESHEAI QTDVQVGIAV AVNGSPRREG KSCSPGHLFE  1080
AVTANAGDIA TESATENAGD TGTDQAHPLD ESKKSKEIRM MKLFRSMLAE FVKDVLKPTW  1140
REGQMSKEAF KTIVKKVVDK VAGSLQSHQI PKSQEKIDQF LEASRQKLTK LVQTDPKDMD  1200
LGHILDDVDF KNSKNIRDAV QKAKTKLNQE VVNLLISDPQ RTQDETQAKI DRVLLKVKRL  1260
DEYFFPGERH VDTIEHDTPF ATGHVSLPSG QSETKNETPQ MEHESVDEDQ GHESAAHIQG  1320
WDKDSRFVRS LCEVPGSNNE PYILHQQCED RSVLRYIYYY LVRILSNNGS QGLSAGGGIP  1380
TPNWDAVADL DAAGGVTRVD VVPRIIQQLS AEASNADVEE SDPPETVIHR AMHLLQNGFG  1440
NYDIFENNCE DFAMFCKTGL SVEKRGLGRS GQALSIIGVP VAAILSSPFG LLFGGPGVAT  1500
VMAGLYCLNR YATDIGIRTD VVKAPVEHLE VNLGCSTSSE PSLAESSATQ AISRDISPIN  1560
ST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	248	RRKNRWSVSRSRSPKRRR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT119657	0.0	BT119657.1 Picea glauca clone GQ04108_H04 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-16	C3H family protein