PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00040541-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 491aa MW: 54752.5 Da PI: 5.6543

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00040541-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	424.4	1.8e-130	215	431	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqgs+w+qdycs+fh +alneg+pg+ pvlrp+gidlkdgllfaal ak+ gk vgipecegaatakspwna+ PSME_00040541-RA 215 PPPEAFLGPKCALWDCPRPAQGSDWCQDYCSNFHGIVALNEGPPGMGPVLRPGGIDLKDGLLFAALGAKTVGKAVGIPECEGAATAKSPWNAP 307 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfdl +l+ge irewlffdkprrafesgnrkqrslpdy+grgwhesrkqvmke+gglkrsyymdpqps++fewhlyeye+n++da+alyrle PSME_00040541-RA 308 ELFDLFVLQGEVIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKELGGLKRSYYMDPQPSNQFEWHLYEYEMNNCDACALYRLE 400 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+vd+kk++k+kv+ ds++dlq+k+grl+a PSME_00040541-RA 401 LKQVDSKKNTKAKVMGDSVSDLQHKIGRLSA 431 ***************************97 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MMGKRSKSMS KSTTHQLFKT KAKNRVDDLQ GMFTDLQQAR KESRVNDALV LEEQVHQLLR 60 EWKAELHEAS PTTSMLAASL CSSDLSTDMW RLLQLHEEED DATSILAAPY SSKLQLNENT 120 LGAANPSSFQ EVIPPNEMRK DFYVDHANAQ AQTIDGTSRS ENIHTESLLQ TTDEGLEAAA 180 QMNRDFDHNL CLSLDPEVEE EHIPKFQGPC PGISPPPEAF LGPKCALWDC PRPAQGSDWC 240 QDYCSNFHGI VALNEGPPGM GPVLRPGGID LKDGLLFAAL GAKTVGKAVG IPECEGAATA 300 KSPWNAPELF DLFVLQGEVI REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQVMK 360 ELGGLKRSYY MDPQPSNQFE WHLYEYEMNN CDACALYRLE LKQVDSKKNT KAKVMGDSVS 420 DLQHKIGRLS AELAVDTKGS TKGRTKLTQK NVSKYTYSAA SPVAPVSNSF LYGQSVQYGY 480 YAEEANGYYG T

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MMGKRSKSMS KSTTHQLFKT KAKNRVDDLQ GMFTDLQQAR KESRVNDALV LEEQVHQLLR  60
EWKAELHEAS PTTSMLAASL CSSDLSTDMW RLLQLHEEED DATSILAAPY SSKLQLNENT  120
LGAANPSSFQ EVIPPNEMRK DFYVDHANAQ AQTIDGTSRS ENIHTESLLQ TTDEGLEAAA  180
QMNRDFDHNL CLSLDPEVEE EHIPKFQGPC PGISPPPEAF LGPKCALWDC PRPAQGSDWC  240
QDYCSNFHGI VALNEGPPGM GPVLRPGGID LKDGLLFAAL GAKTVGKAVG IPECEGAATA  300
KSPWNAPELF DLFVLQGEVI REWLFFDKPR RAFESGNRKQ RSLPDYNGRG WHESRKQVMK  360
ELGGLKRSYY MDPQPSNQFE WHLYEYEMNN CDACALYRLE LKQVDSKKNT KAKVMGDSVS  420
DLQHKIGRLS AELAVDTKGS TKGRTKLTQK NVSKYTYSAA SPVAPVSNSF LYGQSVQYGY  480
YAEEANGYYG T

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115389	0.0	BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657013.1	0.0	PREDICTED: transcription factor VOZ1
Refseq	XP_019079230.1	0.0	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-180	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A5CA22	0.0	A5CA22_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02670.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-176	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]