PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040561-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 118aa    MW: 13613.5 Da    PI: 9.9993
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040561-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-133475247
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                      +y+GVr+++ +gr++AeI+dp++   + r  lg+++taeeAa a++
  PSME_00040561-RA 34 RYRGVRRRP-WGRFAAEICDPKT---KERPLLGTYDTAEEAACAYD 75
                      69*******.**********954...4999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.4893477IPR001471AP2/ERF domain
CDDcd000181.65E-193477No hitNo description
SuperFamilySSF541714.32E-153478IPR016177DNA-binding domain
PfamPF008473.6E-83475IPR001471AP2/ERF domain
SMARTSM003809.3E-143495IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-203478IPR001471AP2/ERF domain
PRINTSPR003678.7E-83546IPR001471AP2/ERF domain
PRINTSPR003678.7E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MKSQQQQSEL QKNESLSPNK LSEKQFKRGK EAGRYRGVRR RPWGRFAAEI CDPKTKERPL  60
LGTYDTAEEA ACAYDFADVH GAVLLQKFVT QKPKNDRCLE PTTQQKKQHA HMILLQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-152975956Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SAD41e-18ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLA0A2G2VN092e-19A0A2G2VN09_CAPBA; Ethylene-responsive transcription factor LEP
TrEMBLA0A2G3B9082e-19A0A2G3B908_CAPCH; Ethylene-responsive transcription factor LEP
STRINGPGSC0003DMT4000478879e-20(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-10DORNROSCHEN-like
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]