PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040625-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 297aa    MW: 34489.4 Da    PI: 8.9546
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040625-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.42.2e-26168225359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK++k+++ pr  YrC +a gCpvkk+v+rsa+dp+ v++tY+geH h+
  PSME_00040625-RA 168 DGCQWRKYGQKMIKNNQRPRCSYRCVMApGCPVKKQVQRSAQDPTKVTTTYKGEHIHS 225
                       9*************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28153225IPR003657WRKY domain
SuperFamilySSF1182905.49E-24158226IPR003657WRKY domain
PROSITE profilePS5081124.753161227IPR003657WRKY domain
SMARTSM007741.2E-28166226IPR003657WRKY domain
PfamPF031069.0E-24168224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MISHTNKITV LVAEINRIDE ENQKLKSMFK RVCSKYNYLQ KHIRSMLHQH KEVDDNQIFY  60
QEHRREDISC PWSVDVDSSS AVSHQSDRYW DGREQGGEKE KKNVKFMEEE QLPSKKRKNG  120
MINSSIEELE ELPNKKIQVK CLSSQYTTAA PKRTVSVQTR SEAALTGDGC QWRKYGQKMI  180
KNNQRPRCSY RCVMAPGCPV KKQVQRSAQD PTKVTTTYKG EHIHSLTPAM AAMRCSSNQF  240
IGEEMKMEIF LVDNQILWLW QKQSQLDCNA IQPWFNLVSI CVDSSTLEQL FVKSFIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-20157226876Probable WRKY transcription factor 4
2lex_A4e-20157226876Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK92e-67A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-30WRKY family protein