PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040750-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25005 Da    PI: 6.5153
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040750-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.64.2e-13101154356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+ ++++ q   Lee F knr  ++++r++LA++l+L+  qV v FqN+Ra  k
  PSME_00040750-RA 101 KKPRLSEGQYALLEESFSKNRLATENQRQDLARELNLPLHQVEVGFQNKRASTK 154
                       66679999*******************************************877 PP
2HD-ZIP_I/II73.83.3e-24100188190
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                       +kk rls+ q +lLEesF++++  + +++++lareL+l  +qv+v Fqn+RA tk  ++E+ ++ Lkr+ ++l +en rL++e +eLr +
  PSME_00040750-RA 100 KKKPRLSEGQYALLEESFSKNRLATENQRQDLARELNLPLHQVEVGFQNKRASTKFNETEMGCKLLKRHNETLITENLRLQEELQELR-S 188
                       5999**************77777778899**********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.29796156IPR001356Homeobox domain
SMARTSM003891.4E-698160IPR001356Homeobox domain
PfamPF000461.6E-10100154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-12100154IPR009057Homeodomain-like
CDDcd000861.99E-8100154No hitNo description
SuperFamilySSF466892.01E-11100160IPR009057Homeodomain-like
SMARTSM003401.3E-9156199IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNGGSDEQIS LGEAKAAFHQ VPVSRRFDLN KFLVLCHRNE EAAAINLASS NSTVDTASAI  60
SSDSGYGIEV KRLQASTEEL ENDRACSRVH KDIEEEGATK KKPRLSEGQY ALLEESFSKN  120
RLATENQRQD LARELNLPLH QVEVGFQNKR ASTKFNETEM GCKLLKRHNE TLITENLRLQ  180
EELQELRSLK LTSPLVPTAT LTVCPSCHRI AAGNNSRPFE WATP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP466034e-33HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA9NKN47e-61A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.18e-24Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]