PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00040770-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 250aa MW: 26822.5 Da PI: 8.7318

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00040770-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	35.2	3.3e-11	1	27	52	78
TTT--SS--S-STTTT-------S--- CS SBP 52 lsefDeekrsCrrrLakhnerrrkkqa 78 ++efDe krsCr+rLa+hn+rrrk+q+ PSME_00040770-RA 1 MNEFDEVKRSCRKRLADHNRRRRKPQT 27 589*********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.28	1	25	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.7E-5	2	24	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-9	2	30	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MNEFDEVKRS CRKRLADHNR RRRKPQTNTI VPAVSSAEAA TALKVEDDDN NVSGSCNNTS 60 RGTVQTSVAA AASLVLRTEA QALLNAMSLP LILQNTKGSQ MNNNSNTNTN SNSNTTTNNP 120 MLQQPNSQKV PVANQQYVQQ QNGGGHKGPN LSLSSPSRQT TAQDYSGLEL VLPWLRTTSD 180 YGGSSHRPPP AMDNILHPII SHEKANVEAF SASSVQNFLP LTGSMSSREL GSSQWMVGSS 240 DSASSLEAGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	7	24	KRSCRKRLADHNRRRRKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	6e-09	SBP family protein