PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00040934-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 532aa    MW: 57519.4 Da    PI: 6.4471
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00040934-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19182231255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W++eIrdp+    r +r++lg+f+tae+Aa+a++ a+ k++g
  PSME_00040934-RA 182 RYRGVRQRP-WGKWASEIRDPK----RaARVWLGTFDTAEDAARAYDTAAIKFRG 231
                       8********.**********83....57*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.78E-34181240No hitNo description
SuperFamilySSF541713.01E-22182241IPR016177DNA-binding domain
PROSITE profilePS5103225.435182239IPR001471AP2/ERF domain
SMARTSM003808.6E-36182245IPR001471AP2/ERF domain
PfamPF008472.4E-12182231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-33182241IPR001471AP2/ERF domain
PRINTSPR003671.0E-11183194IPR001471AP2/ERF domain
PRINTSPR003671.0E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MRRKGEDRGD QSIEIRKEKA APLMESNAQN SDDQYCIPNR HKRIAGMGHP RGFTPEEEMS  60
MIISALSYVG RGQAGSDHLQ RPADRENIYC CSGHDINPSG LKRSRSGEDH INATAFSCTD  120
NSAQAISCQA KLDDEAGSCG VPSENSRMTP DSGDAGMNAE TKSGPSPQSQ SLESAGCTKK  180
KRYRGVRQRP WGKWASEIRD PKRAARVWLG TFDTAEDAAR AYDTAAIKFR GARAKLNFPD  240
EAIARHQAAS FNDVDLIHSA ESTSNVVQVT TSLHPAAQTA TIAGSGSSSY INEGKFPPFM  300
VTPAIVPVEY DLDSIRPPST CFSSHSNFPR SDSVSYLNSL DISGRVTHSQ FPARLSWASN  360
SQQAQLPPFP AASSYNNPVC NMDNPISSTW INAWNINSLS QQPSLDLGTL RAMDHMELAG  420
SCNKSSNSNS NSALFAARFD PTTSSSMNVH TDTTNPQGMN SISLYNDQVR RFDSVGQLVR  480
EQREQPASAS ELVVVVNSSG AAGIETTSID QSFWSPSAIM GQADHAGPPN SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-24181239160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.14e-24ERF family protein