PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00040991-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 354aa MW: 39915.6 Da PI: 8.6365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00040991-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.9e-08	179	227	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er+ R++++ ++L +l P+ + +++K + ++ L +A+++I++Lq PSME_00040991-RA 179 HKLVERQKRNKMKALCSTLISLFPEEF--RKTKHTISDKLLEAIKHIRHLQ 227 99*********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.544	174	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-8	178	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.24E-8	178	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-5	179	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.31E-8	179	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDGEDLRMED LLWRSYLERY PYKACSFSYS QSTVCFSRFH GNIDTDEHRN ADQIKFMQPG 60 TCLYDDALAT VVFDALSNKR PHDYGMLGAA SLGSVVQLDR LVPMILYRRS PNECLGNFGD 120 PAQSNFGDPA QILTCKSFFV EFQQPYFSSG SNRRKKAVAG GRGHDLEASE ECIGNSDVHK 180 LVERQKRNKM KALCSTLISL FPEEFRKTKH TISDKLLEAI KHIRHLQAKL IVLGKKRDEL 240 KATVKPFLGS SSVYKSLQAA QVRPSNVLDK FQTIRVSKFG SGVQVTVNTF KNQIEFSILL 300 MVLEEAEVDV VSATVSAIND RVFYSIHSKI SDFRNFDSVV LQGRIDQLMN GNLA

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDGEDLRMED LLWRSYLERY PYKACSFSYS QSTVCFSRFH GNIDTDEHRN ADQIKFMQPG  60
TCLYDDALAT VVFDALSNKR PHDYGMLGAA SLGSVVQLDR LVPMILYRRS PNECLGNFGD  120
PAQSNFGDPA QILTCKSFFV EFQQPYFSSG SNRRKKAVAG GRGHDLEASE ECIGNSDVHK  180
LVERQKRNKM KALCSTLISL FPEEFRKTKH TISDKLLEAI KHIRHLQAKL IVLGKKRDEL  240
KATVKPFLGS SSVYKSLQAA QVRPSNVLDK FQTIRVSKFG SGVQVTVNTF KNQIEFSILL  300
MVLEEAEVDV VSATVSAIND RVFYSIHSKI SDFRNFDSVV LQGRIDQLMN GNLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	7e-15	bHLH family protein