PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041020-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family S1Fa-like
Protein Properties Length: 90aa    MW: 9866.69 Da    PI: 10.4776
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041020-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA124.82.7e-392690670
              S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      +  +G+nPGlivllvv g+ll f+vgny+ly+yaqk+lPP+kkkPvskkk+kreklkqG+++PGe
  PSME_00041020-RA 26 AAGRGFNPGLIVLLVVVGVLLAFIVGNYVLYMYAQKTLPPKKKKPVSKKKMKREKLKQGISAPGE 90
                      4569************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0032290No hitNo description
PfamPF046892.9E-382790IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MEEDFSSQAD VDPSTFAGQE RLLTKAAGRG FNPGLIVLLV VVGVLLAFIV GNYVLYMYAQ  60
KTLPPKKKKP VSKKKMKREK LKQGISAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1183041e-118BT118304.1 Picea glauca clone GQ04004_N22 mRNA sequence.
GenBankEF0845671e-118EF084567.1 Picea sitchensis clone WS02720_J04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.27e-26DNA-binding protein S1FA
RefseqXP_024026346.17e-26DNA-binding protein S1FA
SwissprotP425532e-14S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLW9SCA38e-24W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.11e-24(Morus notabilis)