PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041099-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 226aa    MW: 26169.7 Da    PI: 6.5177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041099-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.7e-142371148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      r++WT+eEd++l ++++ +G +  W++++ + g +R++k+c++rw +yl
  PSME_00041099-RA 23 RMAWTAEEDKILREYINNHGLErGWSSVPLKAGINRSGKSCRLRWMNYL 71
                      789*****************9999*********99************97 PP
2Myb_DNA-binding54.52.6e-1777122148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +t+E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00041099-RA  77 RGNISTDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 122
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4061871IPR017930Myb domain
SuperFamilySSF466891.47E-2621118IPR009057Homeodomain-like
SMARTSM007172.3E-102273IPR001005SANT/Myb domain
PfamPF002491.2E-142371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-222578IPR009057Homeodomain-like
CDDcd001678.31E-92571No hitNo description
PROSITE profilePS5129425.98872126IPR017930Myb domain
SMARTSM007172.4E-1676124IPR001005SANT/Myb domain
PfamPF002492.8E-1577122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2579126IPR009057Homeodomain-like
CDDcd001672.86E-1181122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEISFDCRMG RPPRCSTEEG LNRMAWTAEE DKILREYINN HGLERGWSSV PLKAGINRSG  60
KSCRLRWMNY LSPNIKRGNI STDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT  120
HLKKKVAIRL NKRDRIQDKM TEEGTHFGPA MDLVKENVSI DNHLSDEEWR TVLEEGLFSN  180
SLSGIPDLSV EYWRSPHITS QLAVLDLGCA FDFFPPPTID FQTEEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-242112625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275148.12e-57PREDICTED: myb-related protein Zm38
SwissprotQ9FJA21e-49TT2_ARATH; Transcription factor TT2
TrEMBLB8LLG16e-57B8LLG1_PICSI; Uncharacterized protein
TrEMBLK9LYX22e-57K9LYX2_9ASPA; R2R3 MYB (Fragment)
STRINGVIT_09s0002g01400.t012e-56(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-43myb domain protein 3
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  4. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  5. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  6. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  7. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]