PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041138-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 565aa MW: 59306 Da PI: 6.1274

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041138-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	343	388	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri + + L+el+P+a K +Ka++L + ++Y+k Lq PSME_00041138-RA 343 HSIAERERRERIAKNLKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 388 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.51E-12	336	392	No hit	No description
SuperFamily	SSF47459	1.44E-15	336	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.348	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	340	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-9	343	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-11	344	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080147	Biological Process	root hair cell development
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MDDIFDQLLT SSWEDISGAD RSSLDSSAGG PTNFLPGDSM GTLQESSRVS TMSLTPSSQM 60 SPAQNNDVQN SSSSAIAGEN TTYLLNKSVA SQTQLESKFP MGGNIQVQGG QKNLQLSLQK 120 EFRNNTSGGS AVLQLKSPGP VSPHGASSQI LPVTGCATRA TLPMPSSAPM GASVNEASGI 180 QSCHGDTLSP TPVQSHWVQS YIPGVPHITS VPGQGKSEAF ILHTEAIHGE GDILGKRFRQ 240 EEEFTERENR SATTELDDRQ GPPLTNYARS VGQTPLTVTA GPQTCQQSTG LQMLQSSQGN 300 SLQQHGNRSV ISQDQLAATA GAVLNGAPRT RVRARRGQAT DPHSIAERER RERIAKNLKS 360 LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAGAVAPLIA DVPAEGSGSL 420 ASAALGQAGG SLSQDELAFE QNVVKLMEKD MTAAMQYLQN KGVCLMPIAL ATAISSSTGK 480 SLMSSGVTNS VDSTSDRQSS GKQPASLTVN SCSGALGIGS AGFGSDFPLK ENTVQKRGRE 540 VVPTAESNGT EFGIVSSLSN LSRKE

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MDDIFDQLLT SSWEDISGAD RSSLDSSAGG PTNFLPGDSM GTLQESSRVS TMSLTPSSQM  60
SPAQNNDVQN SSSSAIAGEN TTYLLNKSVA SQTQLESKFP MGGNIQVQGG QKNLQLSLQK  120
EFRNNTSGGS AVLQLKSPGP VSPHGASSQI LPVTGCATRA TLPMPSSAPM GASVNEASGI  180
QSCHGDTLSP TPVQSHWVQS YIPGVPHITS VPGQGKSEAF ILHTEAIHGE GDILGKRFRQ  240
EEEFTERENR SATTELDDRQ GPPLTNYARS VGQTPLTVTA GPQTCQQSTG LQMLQSSQGN  300
SLQQHGNRSV ISQDQLAATA GAVLNGAPRT RVRARRGQAT DPHSIAERER RERIAKNLKS  360
LQELVPNANK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAGAVAPLIA DVPAEGSGSL  420
ASAALGQAGG SLSQDELAFE QNVVKLMEKD MTAAMQYLQN KGVCLMPIAL ATAISSSTGK  480
SLMSSGVTNS VDSTSDRQSS GKQPASLTVN SCSGALGIGS AGFGSDFPLK ENTVQKRGRE  540
VVPTAESNGT EFGIVSSLSN LSRKE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF086529	0.0	EF086529.1 Picea sitchensis clone WS02911_K24 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-51	LJRHL1-like 1