PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00041209-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NF-YA

Protein Properties

Length: 151aa MW: 17701.6 Da PI: 10.2147

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00041209-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	26.4	2.3e-08	16	49	3	30
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekk......l 30 ++VNaKQy++IlkRRq R+ + +kk PSME_00041209-RA 16 LVFVNAKQYKGILKRRQIRKLKQPHKKrlamilP 49 58*****************977665554555540 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51152	9.722	13	34	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.6E-6	17	41	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MADFLQKDTG SIEEKLVFVN AKQYKGILKR RQIRKLKQPH KKRLAMILPK MNSVSSKAPH 60 SRVKQTKNFK DLEACLNKSE VFGTNIEGSK EDIHDSKDLY SPTSTPLMWS FELYVKELMS 120 MKMSLETLEE KRWYEGNKVN KIVEFKSRLE E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	42	RRQIRKLKQPHKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-