PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041287-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 389aa    MW: 43263.6 Da    PI: 7.627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041287-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09232279455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka ++ + ++Y++sLq
  PSME_00041287-RA 232 SHSLAERVRREKISERMKLLQDLVPGC----NKIIGKAVMVDEIINYVQSLQ 279
                       8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.22E-8226283No hitNo description
SuperFamilySSF474597.85E-16226297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-15228296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.046228278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6232279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
ISVIMALEGN GNSVFDGLTN YNKFSSNSAL NSQTSSTSWH SGILGYALHM NHQSSLQATA  60
EGLFRPVNSS YSSDDVLPFS VQVLDSVNRG THLQNVKLVP EHSPERNFFS SIRAQHPGIE  120
QKCNASGEES SSSDQSTVGR KRRLLPNDKA RFQPPTVVSP GEKNTEYESK SKRPKRAEAK  180
KEKDDLKSDA EQGTHTGKPE ANPRQSEQSA KPPEQPKDYI HVRARRGQAT DSHSLAERVR  240
REKISERMKL LQDLVPGCNK IIGKAVMVDE IINYVQSLQC QVEFLSMKLE AVNPRLDFNM  300
EGFLAKDMLE PSGMPFASDP AMAYPQFHQP KWVSGQLGMP CEMEEQCMGN ARQVALRRMN  360
ENTPLLEGCG DAKDHSLHVT KILIINTSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1184770.0BT118477.1 Picea glauca clone GQ04006_M07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.11e-65transcription factor bHLH78
TrEMBLD5AB870.0D5AB87_PICSI; Uncharacterized protein
STRINGERN100314e-65(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.36e-55cryptochrome-interacting basic-helix-loop-helix 5