PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041310-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 218aa    MW: 24088.7 Da    PI: 4.5944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041310-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-192473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+WvAeIr+p   + r  r++lg+++ta++Aa a+++a+++l+g
  PSME_00041310-RA 24 TYRGVRQRT-WGKWVAEIREP---N-RgVRIWLGTYDTAQGAAFAYDNAALALYG 73
                      69****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-292383No hitNo description
PfamPF008476.5E-122473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-282481IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-202481IPR016177DNA-binding domain
SMARTSM003806.5E-282488IPR001471AP2/ERF domain
PROSITE profilePS5103221.5622481IPR001471AP2/ERF domain
PRINTSPR003678.1E-102536IPR001471AP2/ERF domain
PRINTSPR003678.1E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAKTRGTKKG CMKGKGGPEN ALCTYRGVRQ RTWGKWVAEI REPNRGVRIW LGTYDTAQGA  60
AFAYDNAALA LYGPAAYLNL RDAIRKPTQF ETRSACNDKI QSDVFTDDIN GSVNTIPADH  120
EDQGVVSSIA NKVKVEDLFP IINENSGTHQ PHKELEFLSV DSHENSGTHP PQEELEFLSV  180
DSHEGNFMEG LELDSISSID NSSIINDQIS SLEFIDDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-182580359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.16e-21ERF family protein