PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041322-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 236aa    MW: 26410.5 Da    PI: 6.6319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041322-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-16147197255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r+++ +g++ AeIrd    g + +r++lg+f t eeAa a+++a++  +g
  PSME_00041322-RA 147 RYRGLRRRP-WGKFTAEIRDS---GrRGARVWLGTFKTTEEAAMAYDKAALLNHG 197
                       8********.**********4...5444**********************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.74E-26146206No hitNo description
SuperFamilySSF541717.85E-21147207IPR016177DNA-binding domain
SMARTSM003801.0E-28147211IPR001471AP2/ERF domain
PfamPF008471.1E-11147193IPR001471AP2/ERF domain
PROSITE profilePS5103221.983147205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-28147205IPR001471AP2/ERF domain
PRINTSPR003675.1E-10148159IPR001471AP2/ERF domain
PRINTSPR003675.1E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MALETTSPNN AEGSYQHEHG PVVSAERLLE DVWAHFIAAR KSDQPIHDGL QPANHTKEES  60
CCNVEDQDQD QVQYPLLLPL KENDSEDMIL FQLLNEPAAN LGWTAIHNQQ EMVIPGATGS  120
TADTPAICNT KMTRAQGEAA EKPSTKRYRG LRRRPWGKFT AEIRDSGRRG ARVWLGTFKT  180
TEEAAMAYDK AALLNHGTRA SLNFPIEVIT NDLADTTEKW SSKLISSRQK QKQKQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24146208163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-24146208466ATERF1
3gcc_A3e-24146208466ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025621916.18e-38pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A445BBQ72e-36A0A445BBQ7_ARAHY; Uncharacterized protein
STRINGEOY281143e-34(Theobroma cacao)
STRINGXP_010258782.11e-33(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-32ethylene responsive element binding factor 1