PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041414-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 285aa    MW: 32544.1 Da    PI: 10.6407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041414-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.58.9e-15146195255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++kG+r +k +g Wv+eIr p++   r +++lg++ ta++Aa+a++aa   l+g
  PSME_00041414-RA 146 QFKGIRMRK-WGTWVSEIRMPKS---REKIWLGSYKTAKQAARAYDAAVYHLRG 195
                       69*****99.**********954...4**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.1E-28145205IPR001471AP2/ERF domain
SMARTSM003802.3E-27146209IPR001471AP2/ERF domain
CDDcd000182.92E-23146205No hitNo description
PROSITE profilePS5103220.231146203IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18146205IPR016177DNA-binding domain
PRINTSPR003671.5E-9147158IPR001471AP2/ERF domain
PfamPF008474.1E-7147195IPR001471AP2/ERF domain
PRINTSPR003671.5E-9185205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MWDFMCPRYL YVDVIRSKSA TVKNQQFLSR FKYRWDSPVC NFFRSSQSIR ASTTNLNISS  60
PPHLQSATKC TFIALRFSVL QQFPSSTPPS PGFFQLKQTA TYIPCDSLFS LPTHSVRTAS  120
PNMEKPSREH NSRSPPEEDR RQNYRQFKGI RMRKWGTWVS EIRMPKSREK IWLGSYKTAK  180
QAARAYDAAV YHLRGPKAKF NFPHSVPAIP SVTSFSRQQI QLAAAKYALD EFSSTSPSLQ  240
NVKINNSKAK EKLVSQSIPS VVSETEWSCD SQQITVCGFR NGVVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-131462051474Ethylene-responsive transcription factor ERF096
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-32ERF family protein